Useful in combinatorial chemistry, drug design, or other areas where a large number of compounds need to be analyzed. Tool of JChem for clustering, diversity calculations, and library comparisons based on molecular fingerprints and other descriptors. Physicochemical properties can be calculated, structure activity relationship tables can be created and activity cliffs be visualized. Calculated compound similarities can be used for multidimensional scaling methods, e.g. Compounds can be clustered and diverse subsets can be picked. Scatter plots, box plots, bar charts and pie charts not only visualize numerical or category data, but also show trends of multiple scaffolds or compound substitution patterns. DataWarrior combines dynamic graphical views and interactive row filtering with chemical intelligence.
Xdrawchem windows free#
Free Cheminformatics Program for Data Visualization and Analysis. Also available as freeware, with tools for 2D structure cleaning, 3D optimization and viewing, InChI generation and conversion, drawing of polymers, organometallics, and Markush structures. Advanced chemical editor for drawing chemical structures, queries and reactions developed by ChemAxon. Molecule editor developed by the cheminformatics company CambridgeSoft. Laboratory of the Methods of Genetic Analysis , Institute of Cytology and Genetics, Novosibirsk, Russia. Step-by-step algorithm allows to draw any shape of pedigrees or whole pedigrees. If there are offspring or parents of the pointer which are not yet in the shape they will added to it. Enlargement of shape is making by pointing on person who is already in shape and we will called him pointer. New nuclear family is added to pictured shape of pedigree on each step. PedigreeQuery was made for drawing shapes of pedigrees using step-by-step algorithm. Some times it is required to get chart only of some shapes of such pedigrees. PedigreeQuery is a program for working with large pedigrees. RnaViz2: an improved representation of RNA secondary structure.īioinformatics 19(2): 299-300 Posted on 5 5 Categories RNA Analysis Tags Drawing, RNA Molecule, RnaViz, Secondary Structure Leave a comment on RnaViz 2.0.3 – Secondary Structure Drawings of RNA Molecules VARUS 1.0.0 – Drawing Diverse Samples from RNA-Seq Libraries Peter De Rijk, Jan Wuyts and Rupert De Wachter (2003) Skeletons for several types of RNA molecule are included with the program. In this way a range of similar structures can be drawn with a minimum of effort. Although the program does not try to produce an initially non-overlapping drawing, the layout of a properly positioned structure drawing can be applied to newly created drawing using skeleton files.
Sequences can be automatically numbered, and several other types of labels can be used to annotate particular bases or areas.
Display of special structural elements such as pseudo-knots or unformatted areas is possible. The layout of a structure can be changed easily. Drawings can be created starting from DCSE alignment files if they incorporate structure information or from mfold ct files. RnaViz is a user-friendly, portable, GUI program for producing publication-quality secondary structure drawings of RNA molecules.
0 kommentar(er)
